Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs9614654 chr22:45778830 A/G 5.51E-7 172 25.67 24.1 21.93 KM Plot
PCPG rs9614655 chr22:45783844 G/A 1.53E-10 174 25.6 24.5 18.7 KM Plot
PCPG rs9620655 chr22:21292223 T/G 7.74E-5 177 12.57 31.68 25.2 KM Plot
PCPG rs9621295 chr22:32007153 G/A 1.07E-5 176 25.77 15.1 13.23 KM Plot
PCPG rs9626648 chr22:45571507 C/T 0.000119 178 25.87 20.12 19.3 KM Plot
PCPG rs9643663 chr8:74323888 A/G 0.000119 178 24.6 27.23 43.47 KM Plot
PCPG rs9652616 chr16:71727290 C/G 8.13E-6 178 24.23 30.93 14.5 KM Plot
PCPG rs9657705 chr9:136942894 A/G 1.85E-5 178 25.53 21.55 28.57 KM Plot
PCPG rs9657706 chr9:136942957 A/G 1.85E-5 178 25.53 21.55 28.57 KM Plot
PCPG rs9674179 chr16:88678031 C/T 0.000342 176 25.53 24.35 14.47 KM Plot
PCPG rs9682525 chr3:80581579 T/C 6.94E-5 176 19.53 24.53 27.2 KM Plot
PCPG rs9733585 chr10:42631612 A/C 0.000403 171 22.63 24.52 29.02 KM Plot
PCPG rs973387 chr2:118544453 T/C 1.51E-5 178 24.85 28.8 11.65 KM Plot
PCPG rs975127 chr2:107220782 A/C 0.00025 175 26.57 23.53 25.87 KM Plot
PCPG rs9756317 chr3:53088815 T/C 6.44E-6 175 11.78 20.13 25.77 KM Plot